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State, MTA district and New York City: three tax layers, plus insured disability and PFL

Setting up a startup in New York

New York is three tax systems stacked on one address: the state, the MTA’s twelve-county commuter district, and in the five boroughs New York City itself. A Delaware startup that hires in Manhattan files a state franchise tax return, an MTA surcharge, a city Business Corporation Tax return, a commuter payroll tax once payroll is large enough, and buys disability and Paid Family Leave insurance before its first employee’s second month. SaaS is taxable, and the city has its own leave law.

Areas
6
Setup steps
8
Checked
October 13, 2026
New York, raised. Point at a neighbor to compare; click to open its guide.

At a glance

Corporate tax
6.5% (7.25% over $5M) + NYC 8.85%
Tax on wages
3.9%–10.9%; NYC residents add 3.078%–3.876%
Sales tax
4% state; 8⅞% in NYC
Economic nexus
Over $500,000 and over 100 sales
Minimum wage
$17.00 NYC area / $16.00 rest of state
UI wage base
$17,600
New-employer UI rate
4.1%
Paid leave program
PFL 0.432% (max $411.91); DBL 0.5% (max $0.60/wk)
Annual report
Biennial statement, $9 every two years

2026 figures, each explained with its source on the area’s page. On top of the federal baseline.

Setup, in order

  1. Qualify to do business

    Before you start doing business in New York

    File an Application for Authority with the Department of State ($225) with a Delaware certificate of good standing dated within a year. An LLC formed under a foreign country’s law also files a beneficial owner disclosure or attestation.

  2. Open withholding and UI accounts

    Before the first New York payroll

    Register with the Department of Labor for unemployment insurance and with Taxation and Finance for withholding. Both feed the quarterly NYS-45.

  3. Insure workers’ comp, DBL and PFL

    Before the first hire; DBL/PFL within weeks of it

    Buy workers’ compensation and a disability (DBL) and Paid Family Leave policy from a carrier or the State Insurance Fund. DBL/PFL is required four weeks after you have had an employee on 30 days in a calendar year.

  4. Report new hires and contractors

    Within 20 calendar days of hire

    Report each new employee, and each contractor with a contract over $2,500, to the New York new-hire program.

  5. Notices, leave policy and paydays

    At hire

    Give new hires the pay notice and, in NYC, the Notice of Employee Rights for protected time off; set paydays at least semi-monthly (weekly for manual workers).

  6. Register for sales tax

    At least 20 days before taxable sales begin

    Apply for a Certificate of Authority once you have a New York employee or office, or pass $500,000 and 100 sales in four quarters. SaaS is taxable.

  7. Account for NYC corporate tax

    First return due Apr 15 after year one

    If you do business in the five boroughs, the NYC Business Corporation Tax is a separate return (NYC-2) with the NYC Department of Finance.

  8. Watch the MCTMT threshold

    Each quarter

    Track payroll in the commuter district each quarter; once it exceeds $312,500, file Form MTA-305.

The six areas

Common questions

How many corporate returns does a startup in New York City file?

Usually two, sometimes three. New York State’s Form CT-3 is the franchise tax; if you have activity in the twelve-county commuter district, Form CT-3-M adds the MTA surcharge; and if you do business in the five boroughs, NYC’s Business Corporation Tax is a separate return (Form NYC-2) to a separate agency, the NYC Department of Finance.

Is our SaaS product taxable in New York?

Yes. New York taxes prewritten computer software as tangible personal property no matter how it is delivered, and the Department’s bulletin names remote access explicitly. Custom software built to one customer’s specifications is not taxable; software that is not designed for a particular purchaser is.

Do we have to report contractors to New York?

Yes, if the contract is over $2,500. Since January 1, 2022, New York has required employers to report individuals working under an independent contractor arrangement with contracts in excess of $2,500, through the same new-hire reporting channel used for employees.

Our payroll provider handles taxes. Does that cover disability and Paid Family Leave?

Yes, separately. New York requires disability benefits (DBL) and Paid Family Leave coverage in addition to workers’ compensation. Both are bought from an insurance carrier (or the State Insurance Fund), not paid to a state agency, and a company becomes a covered employer four weeks after it has had at least one employee on 30 days in a calendar year.

Does the New York LLC Transparency Act apply to our Delaware C-corp?

No. The New York LLC Transparency Act, in effect since January 1, 2026, applies only to limited liability companies formed under the law of a foreign country and authorized to do business in New York; the Governor vetoed a bill in December 2025 that would have extended it to US LLCs. Each covered LLC files a beneficial owner disclosure or an attestation of exemption with the Department of State ($25). A Delaware C-corp, or a Delaware LLC, is outside it.

Does New York have an R&D credit a seed-stage startup can claim?

Not automatically. The state’s R&D credit for most companies comes through the Excelsior Jobs Program, which Empire State Development admits companies to based on job and investment commitments. Once admitted, the Excelsior R&D credit is 50% of the share of the federal research credit tied to New York expenditures, capped at 6% of New York research spending, and it is fully refundable.

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Sources

Checked against each agency’s own page on . Rates and thresholds change, usually on January 1.

General information for US companies, not tax, legal or accounting advice for yours. Rules and thresholds change; confirm the specifics with a CPA or the agency before you act on them.